`circadapt.adapt`

Package Contents

Classes

ModelAdapt

Model class to be inherited to give model adaptation protocol.

Functions

`get_reference_senses`(model)
`get_parameters`(model)
`get_sens`(model)
`run_simulations`(model[, n_sims, verbose])
`calculate_derivative`(model, parameters, senses[, ...])

Attributes

`rel_std_amref`
`rel_std_vwall`
`rel_std_sfpas`

Objects

class circadapt.adapt.ModelAdapt

Model class to be inherited to give model adaptation protocol.

get_adapt_options(): Get default adapt options.

adapt(options: dict = {}, output: bool = False, verbose: bool = False) → None

Run adaptation protocol.

The adaptation protocol runs n_cycles cycles. Each cycle has two phases, namely rest adaptation and exercise adaptation. First, in exercise, the Patches and vessel wall volumes are adapted to load. In rest, vessels are adapted to flow.

Parameters

optionsdictionary, optional: Options for the protocol. To set options, use the function get_adapt_options(), which is used by default. The default is {}.
outputbool, optional: DESCRIPTION. The default is False.

Returns

senses_resultsTYPE: Only when output=True.
senses_normTYPE: Only when output=True.
actor_resultsTYPE: Only when output=True.
actor_vwallTYPE: Only when output=True.

adapt_exercise(options): Trigger all excercise adaptation functions.

adapt_rest(options): Trigger all rest adaptation functions.

calculate_and_set_matrix(verbose=False)

get_matrix(verbose=False)

circadapt.adapt.get_reference_senses(model)

circadapt.adapt.get_parameters(model)

circadapt.adapt.get_sens(model)

circadapt.adapt.rel_std_amref = 0.02

circadapt.adapt.rel_std_vwall = 0.05

circadapt.adapt.rel_std_sfpas = 0.05

circadapt.adapt.run_simulations(model, n_sims=1000, verbose=False)

circadapt.adapt.calculate_derivative(model, parameters, senses, include_for_average=None, verbose=False)

circadapt.adapt