Todo
Improve autoapi module
circadapt.components.patch
Patch objects.
Module Contents
Classes
Patch2022 is based on Patch in Walmsley 2015. |
Objects
- class circadapt.components.patch.Patch2022(model, objects=None, wall_locs=None)
Bases:
circadapt.components.Component
Patch2022 is based on Patch in Walmsley 2015.
Parameters
- Am_ref: float
Reference wall area at \(l_{s} = l_{s,ref}\).
- V_wall: float
Wall volume
- v_max: float
Maximum shortening velocity
- l_se: float
lgth of the series elastic element, i.e. \(l_{s} -l_{si}\) for which stress is zero.
- l_s0: float
Reference sarcomere lgth for which at \(A_m (l_{s,ref}) = A_{m,ref}\).
- l_s0: float
Zero passive stress lgth
- dl_s_pas: float
- Sf_pas: float
Linear ECM stress coefficient
- k1: float
Nonlinear exponent ECM stress component
- tr: float
Contraction time constant
- td: float
Relaxation time constant
- time_act: float
Relative contraction duration
- Sf_act: float
Linear active stress component
- dt: float
Activation delay relative to intrinsic activation
- C_rest: float
Rest contractility
- l_si0: float
Reference lgth for zero-active-stress
- LDAD: float
lgth dependend activation duration
- ADO: float
activation duration offset
- LDCC: float
lgth dependend contractility coefficient
- Sf_pasMaxT: float
Maximum ecm stress (adaptation sens variable)
- Sf_pasActT: float
Active weighted passive stress (adaptation sens variable)
- FacSf_actT: float
Active stress (adaptation sens variable)
- LsPasActT: float
Weighted sarcomere lgth average (adaptation sens variable)
- adapt_gamma: bool
Adaptation constant
Signals
Signals are arrays. Each point in the array represents a point in time with step-size controlled by the solver.
- l_s: array
Sarcomere lgth
- l_si: array
State variable: Intrinsic sarcomere lgth
- LsiDot: array
State variable: Intrinsic sarcomere lgth time-derivative
- C: array
State variable: contraction curve
- C_dot: array
State variable: contraction time-derivative
- Am: array
Patch mid-wall area
- Am0: array
Patch mid-wall zero-stress area
- Ef: array
Natural strain
- T: array
Mid-wall tension
- dA_dT: array
Area-tension derivative
- Sf: array
Total fibre stress at mid-wall
- Sf_pasT: array
Total passive stress at mid-wall
- SfEcm: array
Total ECM stress at mid-wall
- dSf_dEf: array
Total stiffness coefficient
- dSf_pas_dEf: array
Total passive stiffness coefficient
- SfEcmMax: array
Adaptation: Maximum ECM stress
- Sf_actMax: array
Adaptation: maximum active stress
- Sf_pasAct: array
Adaptation: active-weighted passive stress
- LsPasAct: array
Adaptation: active-weigthed sarcomere lgth
- parameters = ['Am_ref', 'V_wall', 'v_max', 'l_se', 'l_s0', 'l_s_ref', 'dl_s_pas', 'Sf_pas', 'tr', 'td',...
- signals = ['l_s', 'l_si', 'l_si_dot', 'C', 'C_dot', 'Am', 'Am0', 'Ef', 'T', 'dA_dT', 'Sf', 'Sf_pas_total',...
- parameter_on_set
- build()
(re)build patch locations based on wall locations.
There is no compatibility with different types of patches used in the model. If you use different type of patches, please use the direct way of interacting with the c++ object, i.e. set() and get().
- get_all_patches()
Get all patches of the walls included in this pointer object.
- add_object(o)